Representation and analyses of bacterial genome evolution data

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General
Title
Representation and analyses of bacterial genome evolution data
Type
Dataset
Date Record Created
2012-09-19
Date Record Modified
(no information)
Language
English
Embargo
Embargo
Not embargoed.
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Coverage
Date Coverage
2009-01 to 2013-12
Time Period
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Description
  1. This data set consists of computer programmes written to run models and analyse the results, as well as the output from those simulations. Programmes are text files containing code written in the Python programming language to run in the mathematical computer software Sage. Code written was run on Sage. Data that was output was processed into PDF figures also using code written for Sage. There is a folder of text files (sage-code/filename.sage), and a folder of output (sage-output/) that itself contains several levels of subfolders. All files from the output are of formats .txt, .sage, or .pdf.

    • Type: full
Related Publications
  1. Francis, A., Tanaka, M. (2012), Evolution of variation in presence and absence of genes in bacterial pathways. BMC Evolutionary Biology, 12, 55-80. doi: 10.1186/1471-2148-12-55
Related Websites
  1. UWS School of Computing, Engineering and Mathematics
Related Data
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Related Services
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Technical metadata
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People
Creators
  1. Associate Professor Andrew Francis , School of Computing, Engineering and Mathematics [CI]
Primary Contact
Andrew Francis, a.francis@uws.edu.au
Supervisors
(no information)
Subject
Fields of Research
  1. 0102 - Applied Mathematics (0102)
  2. 060501 - Bacteriology (060501)
Socio-Economic Objective
  1. 970106 - Expanding Knowledge in the Biological Sciences (970106)
Keywords
  1. Mathematical models
  2. Bioinformatics
  3. Bacteria
  4. Bacterial genetics
  5. Microbial genomics
Research Activity
Strategic basic research
Rights
License
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Access Rights/Conditions
To discuss data access conditions please contact Associate Professor Andrew Francis, a.francis@uws.edu.au.
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Citation
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Identifier Type
useCuration
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