Transcriptomics of chickpea resistant genotypes to Phytophthora medicaginis during the biotrophic-to-necrotrophic shift
  • Description

    RNA-seq profiling roots of two chickpea parents, the chickpea cultivar Yorker A, and a chickpea x Cicer echinospermum backcross derivative, 04067-81-2-1-1-(B) (04067-(B)), and their progeny D09024B>F6>040 (D09024B) and D09024A>F6>015 (D09024A) at 12, 24, and 72 hours post Phytophthora mediacginis challenge. 124 raw Illumina paired-end FASTQ files (Metatranscriptome sequencing) 1 Metadata file 2 processed files (raw and normalised counts)


    • - Start
      Data publication title Transcriptomics of chickpea resistant genotypes to Phytophthora medicaginis during the biotrophic-to-necrotrophic shift
    • Description

      RNA-seq profiling roots of two chickpea parents, the chickpea cultivar Yorker A, and a chickpea x Cicer echinospermum backcross derivative, 04067-81-2-1-1-(B) (04067-(B)), and their progeny D09024B>F6>040 (D09024B) and D09024A>F6>015 (D09024A) at 12, 24, and 72 hours post Phytophthora mediacginis challenge. 124 raw Illumina paired-end FASTQ files (Metatranscriptome sequencing) 1 Metadata file 2 processed files (raw and normalised counts)


      • Data type dataset
    • Keywords
      • SDG 15 Life on Land
      • SDG 2 Zero Hunger
      • Cicer arietinum
      • pathology
      • sustainable agriculture
      • root disease
      • multi-omic analysis
      • quantitative resistance
      • crop breeding
    • Funding source
    • Grant number(s)
      • -
      • FoR codes
      • 300404 - Crop and pasture biochemistry and physiology
      • 300409 - Crop and pasture protection (incl. pests, diseases and weeds)
      SEO codes
      • 260303 - Grain legumes
    - Coverage
      Temporal (time) coverage
    • Start date 2019/01/01
    • End date 2022/12/31
      • Time period
       
      Spatial (location,mapping) coverage
    • Locations
      • Hawkesbury Institute for the Environment, Western Sydney University (Richmond, NSW, Australia).
    - Data
    - Supplements
    • Related publications
        Name Comparative transcriptomics and metabolomics reveal the phenylpropanoid pathway's role in chickpea resistance to Phytophthora medicaginis during the biotrophic-to-necrotrophic shift
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    - License
    - Citation
      Citation Coles, Donovin; Bithell, Sean L; Plett, Krista L; Plett, Jonathan (2025): Transcriptomics of chickpea resistant genotypes to Phytophthora medicaginis during the biotrophic-to-necrotrophic shift. Western Sydney University. https://doi.org/10.26183/8mhr-7n58

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